Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs80133508 | chr6:24417212 | C/T | 4.55E-15 | 490 | 16.37 | 14.85 | 11.07 | KM Plot |
| THCA | rs80135349 | chr16:20606417 | A/G | 5.51E-6 | 477 | 15.9 | 17.47 | 14.27 | KM Plot |
| THCA | rs80170797 | chr4:84630891 | A/C | 5.88E-6 | 483 | 16.2 | 12.7 | 18.47 | KM Plot |
| THCA | rs80172672 | chr12:69605680 | G/A | 0 | 480 | 16.02 | 15 | 7.77 | KM Plot |
| THCA | rs80191637 | chr11:66548575 | A/G | 0.000224 | 486 | 16.33 | 14 | 14.9 | KM Plot |
| THCA | rs80197580 | chr6:24419891 | G/A | 5.55E-15 | 488 | 16.37 | 14.85 | 11.07 | KM Plot |
| THCA | rs80207354 | chr3:127634560 | T/C | 0 | 490 | 16.27 | 15 | 6.03 | KM Plot |
| THCA | rs8022609 | chr14:36226413 | C/T | 5.07E-6 | 490 | 15.97 | 16.07 | 8.33 | KM Plot |
| THCA | rs80229559 | chr6:24422391 | G/A | 5.26E-7 | 484 | 16.38 | 14.78 | 9.25 | KM Plot |
| THCA | rs8023345 | chr15:41338348 | T/G | 0.000136 | 490 | 15.17 | 16.3 | 16.83 | KM Plot |
| THCA | rs80235437 | chr11:8601152 | C/T | 4.69E-5 | 489 | 15.9 | 17.85 | 20.07 | KM Plot |
| THCA | rs80259160 | chr6:26190199 | C/T | 2.3E-8 | 489 | 15.48 | 16.8 | 4.75 | KM Plot |
| THCA | rs8025983 | chr15:89044721 | G/A | 0.000115 | 480 | 16.3 | 15 | 15.9 | KM Plot |
| THCA | rs80264941 | chr14:59857852 | T/C | 0.000167 | 487 | 16.3 | 14.9 | 5.45 | KM Plot |
| THCA | rs80273481 | chr2:29027447 | A/T | 0.000118 | 489 | 15.32 | 17.93 | 14.98 | KM Plot |